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BergenShaw International
Advanced process optimization software tool enables high throughput laboratories to optimize their gene sequencing, gene expression, genotyping, proteomics, biomolecular screening, and other research processes.
http://www.bergenshaw.com/

The Rossum Project
An Open Source robotics project that aims to develop standardized simulators, control software, and APIs for mobile robotics applications. All code is Free Software licensed under the GNU GPL.
http://rossum.sourceforge.net/

Aerosim Blockset
A Matlab/Simulink block library useful for rapid development of nonlinear 6-DOF Unmanned Air Vehicle (UAV) dynamic models. Proprietary, commercial software. May be used without charge by some non-commercial users.
http://www.u-dynamics.com/aerosim/

Dave's Multi-tasking Sumo Robot Program
Multi-tasking control program for a Sumo robot equipped with multiple sensors. C source code for the 68HC11 Handiboard.
http://www.ece.concordia.ca/~dave/project/soft.html

TeamBots
A collection of Java-based control and simulation programs for multiagent mobile robotics research developed at CMU and Georgia Tech. Full source code is included. Non-commercial use only.
http://www-2.cs.cmu.edu/~trb/TeamBots/